Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas syringae group genomosp. 3; x__Pseudomonas syringae pv. delphinii
NCBI Strain Identifiers ICMP529
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 99.96%
CheckM Contamination 1.06%
CheckM Strain Heterogeneity 33.33
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 428
N50 Contigs 27,126 bp
Longest Contig 113,952 bp
Scaffold Count 411
N50 Scaffolds 27,926 bp
Longest Scaffold 183,037 bp
Genome Size 6,143,857 bp
Protein Count 5,622
Coding Density 88.33%
GC Percentage 58.69%
Ambiguous Bases 111
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PdpICMP529
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976282
Country New Zealand: Palmerston North
Date 2015-10-20
Genbank Assembly Accession GCA_001400335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,772
Refseq Category na
Seq Rel Date 2015/10/20
Spanned Gaps 17
Species Taxid 251701
SSU Count 1
Submitter University of Toronto
Taxid 192088
Total Gap Length 612
Translation Table 11
tRNA Count (total) 59
Type Material assembly from pathotype material
Unspanned Gaps 0
Version Status latest
WGS Master LJQH00000000.1