Variovorax sp900115375
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Variovorax; s__Variovorax sp900115375
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Variovorax; s__Variovorax paradoxus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Variovorax; s__Variovorax paradoxus
NCBI Strain Identifiers H108
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900115375.1)
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 1.29%
CheckM Strain Heterogeneity 60.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 397
N50 Contigs 45,945 bp
Longest Contig 239,324 bp
Scaffold Count 397
N50 Scaffolds 45,945 bp
Longest Scaffold 239,324 bp
Genome Size 9,627,235 bp
Protein Count 9,080
Coding Density 91.50%
GC Percentage 69.13%
Ambiguous Bases N/A
GTDB representative GCA_900115375.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM139962v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04146767
Country USA: Cincinnati; Ohio
Date 2015-10-19
Genbank Assembly Accession GCA_001399625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Drinking Water
Latitude Longitude None
Molecule Count N/A
CDS Count 9,037
Refseq Category na
Seq Rel Date 2015/10/19
Spanned Gaps 0
Species Taxid 34073
SSU Count 2
Submitter US EPA
Taxid 34073
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKTY00000000.1