Streptococcus agalactiae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
NCBI Strain Identifiers Mother4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000186445.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 87
N50 Contigs 80,843 bp
Longest Contig 258,480 bp
Scaffold Count 87
N50 Scaffolds 80,843 bp
Longest Scaffold 258,480 bp
Genome Size 2,045,661 bp
Protein Count 2,035
Coding Density 88.97%
GC Percentage 35.28%
Ambiguous Bases N/A
GTDB representative GCA_000186445.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Mother4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2780147
Country France
Date 2014-11-4
Genbank Assembly Accession GCA_001398555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Vaginal fluid
Latitude Longitude None
Molecule Count N/A
CDS Count 2,065
Refseq Category na
Seq Rel Date 2014/11/04
Spanned Gaps 0
Species Taxid 1311
SSU Count 1
Submitter INSTITUT PASTEUR
Taxid 1311
Total Gap Length 0
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CDDX00000000.1