Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers Bir 42
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 167
N50 Contigs 81,141 bp
Longest Contig 216,901 bp
Scaffold Count 137
N50 Scaffolds 86,305 bp
Longest Scaffold 216,901 bp
Genome Size 4,332,800 bp
Protein Count 4,170
Coding Density 89.88%
GC Percentage 65.47%
Ambiguous Bases 38
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6221_3#6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA961660
Country United Kingdom: Midlands
Date 2015-7-14
Genbank Assembly Accession GCA_001397695.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,290
Refseq Category na
Seq Rel Date 2015/07/14
Spanned Gaps 30
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 4818
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CNCY00000000.1