Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers Bir 181
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 2.71%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 1,313
N50 Contigs 28,546 bp
Longest Contig 232,489 bp
Scaffold Count 1,193
N50 Scaffolds 44,806 bp
Longest Scaffold 256,329 bp
Genome Size 4,580,354 bp
Protein Count 4,796
Coding Density 86.84%
GC Percentage 63.70%
Ambiguous Bases 74
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6540_3#13
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1019134
Country United Kingdom: Midlands
Date 2015-7-15
Genbank Assembly Accession GCA_001394555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,219
Refseq Category na
Seq Rel Date 2015/07/15
Spanned Gaps 120
Species Taxid 1773
SSU Count 2
Submitter SC
Taxid 1773
Total Gap Length 13056
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CNFP00000000.1