Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers Bir 139
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.78%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 183
N50 Contigs 58,150 bp
Longest Contig 196,746 bp
Scaffold Count 156
N50 Scaffolds 60,969 bp
Longest Scaffold 211,903 bp
Genome Size 4,249,444 bp
Protein Count 4,131
Coding Density 90.00%
GC Percentage 65.40%
Ambiguous Bases 46
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6540_1#21
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1019094
Country United Kingdom: Midlands
Date 2015-7-14
Genbank Assembly Accession GCA_001394175.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,236
Refseq Category na
Seq Rel Date 2015/07/14
Spanned Gaps 27
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 3125
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CNEL00000000.1