Paeniclostridium sordellii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Paeniclostridium; s__Paeniclostridium sordellii
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Paeniclostridium; s__Paeniclostridium sordellii
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Paeniclostridium; s__Paeniclostridium sordellii
NCBI Strain Identifiers UMC178
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000953675.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.93%
CheckM Strain Heterogeneity 0.0
5S Count 14
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 32
N50 Contigs 333,636 bp
Longest Contig 1,605,351 bp
Scaffold Count 32
N50 Scaffolds 333,636 bp
Longest Scaffold 1,605,351 bp
Genome Size 3,492,003 bp
Protein Count 3,406
Coding Density 87.03%
GC Percentage 27.31%
Ambiguous Bases 4
GTDB representative GCA_000953675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name UMC178
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1572095
Country USA
Date 2015-4-20
Genbank Assembly Accession GCA_001372975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Tissue isolate
Latitude Longitude None
Molecule Count N/A
CDS Count 3,341
Refseq Category na
Seq Rel Date 2015/04/20
Spanned Gaps 0
Species Taxid 1505
SSU Count 3
Submitter SC
Taxid 1505
Total Gap Length 0
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CDNP00000000.1