Propionibacterium freudenreichii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Propionibacteriales; f__Propionibacteriaceae; g__Propionibacterium; s__Propionibacterium freudenreichii
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Propionibacteriales; f__Propionibacteriaceae; g__Propionibacterium; s__Propionibacterium freudenreichii
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Propionibacteriales; f__Propionibacteriaceae; g__Propionibacterium; s__Propionibacterium freudenreichii
NCBI Strain Identifiers CIRM-BIA 527
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000940845.1)
Genome Characteristics
CheckM Completeness 98.79%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 120
N50 Contigs 50,293 bp
Longest Contig 127,223 bp
Scaffold Count 63
N50 Scaffolds 104,864 bp
Longest Scaffold 294,451 bp
Genome Size 2,576,369 bp
Protein Count 2,269
Coding Density 87.82%
GC Percentage 67.31%
Ambiguous Bases N/A
GTDB representative GCA_000940845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name CIRM-BIA527
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2826826
Country None
Date 2015-4-20
Genbank Assembly Accession GCA_001368975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,231
Refseq Category na
Seq Rel Date 2015/04/20
Spanned Gaps 57
Species Taxid 1744
SSU Count 1
Submitter INRA STLO
Taxid 1744
Total Gap Length 2006
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CDAC00000000.1