Vibrio crassostreae
Isolate HQ 5S/16S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio crassostreae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio crassostreae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio crassostreae
NCBI Strain Identifiers J2-9
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001048535.1)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.56%
CheckM Strain Heterogeneity 14.29
5S Count 1
16S Count 1
23S Count 2
tRNA Count 16
Contig Count 174
N50 Contigs 188,508 bp
Longest Contig 536,898 bp
Scaffold Count 173
N50 Scaffolds 195,582 bp
Longest Scaffold 613,239 bp
Genome Size 5,770,567 bp
Protein Count 5,233
Coding Density 85.64%
GC Percentage 44.27%
Ambiguous Bases N/A
GTDB representative GCA_001048535.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name VRSK9v1_PRJEB5876
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2591285
Country None
Date 2015-4-22
Genbank Assembly Accession GCA_001368855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,211
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 1
Species Taxid 246167
SSU Count 1
Submitter STATION BIOLOGIQUE DE ROSCOFF
Taxid 246167
Total Gap Length 100
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCJY00000000.1