Lactiplantibacillus plantarum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactiplantibacillus; s__Lactiplantibacillus plantarum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum
NCBI Strain Identifiers 80
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615325.1)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 2.93%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 67
N50 Contigs 92,828 bp
Longest Contig 312,995 bp
Scaffold Count 67
N50 Scaffolds 92,828 bp
Longest Scaffold 312,995 bp
Genome Size 3,224,773 bp
Protein Count 3,082
Coding Density 84.14%
GC Percentage 44.36%
Ambiguous Bases N/A
GTDB representative GCA_000615325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name LP_newbler2.7
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3158485
Country None
Date 2015-3-19
Genbank Assembly Accession GCA_001368775.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,089
Refseq Category na
Seq Rel Date 2015/03/19
Spanned Gaps 0
Species Taxid 1590
SSU Count 2
Submitter VRIJE UNIVERSITEIT BRUSSEL
Taxid 1590
Total Gap Length 0
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CBZW000000000.1