Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhi
NCBI Strain Identifiers dn89
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 92
N50 Contigs 122,617 bp
Longest Contig 321,317 bp
Scaffold Count 71
N50 Scaffolds 155,022 bp
Longest Scaffold 488,967 bp
Genome Size 4,932,186 bp
Protein Count 4,809
Coding Density 86.83%
GC Percentage 51.84%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 10540_1#36
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2152366
Country Viet Nam
Date 2015-4-6
Genbank Assembly Accession GCA_001365135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,048
Refseq Category na
Seq Rel Date 2015/04/06
Spanned Gaps 21
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 90370
Total Gap Length 6004
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CVDV00000000.1