Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers CH15
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 57
N50 Contigs 238,925 bp
Longest Contig 885,954 bp
Scaffold Count 56
N50 Scaffolds 257,851 bp
Longest Scaffold 885,954 bp
Genome Size 4,946,501 bp
Protein Count 4,722
Coding Density 87.55%
GC Percentage 52.14%
Ambiguous Bases 3
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 8490_2#58
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1568461
Country Canada
Date 2015-4-3
Genbank Assembly Accession GCA_001350035.1
Genome Category Isolate
Genome Representation full
Isolate CH15
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,031
Refseq Category na
Seq Rel Date 2015/04/03
Spanned Gaps 1
Species Taxid 28901
SSU Count 5
Submitter SC
Taxid 85569
Total Gap Length 14
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGGH00000000.1