Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers A70769
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.61%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 219
N50 Contigs 41,293 bp
Longest Contig 151,017 bp
Scaffold Count 166
N50 Scaffolds 59,409 bp
Longest Scaffold 151,017 bp
Genome Size 4,311,174 bp
Protein Count 4,173
Coding Density 90.07%
GC Percentage 65.37%
Ambiguous Bases 68
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6180_2#7
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA787727
Country Uganda: Kampala
Date 2015-4-3
Genbank Assembly Accession GCA_001345215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,291
Refseq Category na
Seq Rel Date 2015/04/03
Spanned Gaps 53
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 1592
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGGG00000000.1