Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers A70655
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.61%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 285
N50 Contigs 38,849 bp
Longest Contig 151,919 bp
Scaffold Count 216
N50 Scaffolds 58,308 bp
Longest Scaffold 184,719 bp
Genome Size 4,332,140 bp
Protein Count 4,235
Coding Density 90.14%
GC Percentage 65.42%
Ambiguous Bases 81
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6180_1#8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA787703
Country Uganda: Kampala
Date 2015-4-22
Genbank Assembly Accession GCA_001345075.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,346
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 69
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 1941
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHZH00000000.1