Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers SMRU1872
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 4.94%
CheckM Strain Heterogeneity 8.11
5S Count 7
16S Count 4
23S Count 6
tRNA Count 20
Contig Count 180
N50 Contigs 64,330 bp
Longest Contig 165,022 bp
Scaffold Count 166
N50 Scaffolds 64,330 bp
Longest Scaffold 165,022 bp
Genome Size 2,241,984 bp
Protein Count 2,259
Coding Density 84.67%
GC Percentage 39.65%
Ambiguous Bases 29
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6823_1#24
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1025778
Country Thailand: Maela
Date 2015-4-22
Genbank Assembly Accession GCA_001343375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,422
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 14
Species Taxid 1313
SSU Count 4
Submitter SC
Taxid 1313
Total Gap Length 3208
Translation Table 11
tRNA Count (total) 189
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHHM00000000.1