Undefined name (Failed Quality Check)
Isolate LQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers SMRU1199
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 51.72%
CheckM Strain Heterogeneity 100.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 62
N50 Contigs 63,966 bp
Longest Contig 176,223 bp
Scaffold Count 62
N50 Scaffolds 63,966 bp
Longest Scaffold 176,223 bp
Genome Size 2,385,310 bp
Protein Count 2,488
Coding Density 86.86%
GC Percentage 39.74%
Ambiguous Bases 10
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 6755_6#22
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1025175
Country Thailand: Maela
Date 2015-4-22
Genbank Assembly Accession GCA_001340555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,675
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 0
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGXI00000000.1