Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 11A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 89
N50 Contigs 40,347 bp
Longest Contig 152,603 bp
Scaffold Count 77
N50 Scaffolds 50,163 bp
Longest Scaffold 171,903 bp
Genome Size 2,058,680 bp
Protein Count 2,094
Coding Density 86.63%
GC Percentage 39.64%
Ambiguous Bases 33
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6630_1#7
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1024205
Country None
Date 2015-4-22
Genbank Assembly Accession GCA_001336195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,234
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 12
Species Taxid 1313
SSU Count 0
Submitter SC
Taxid 1313
Total Gap Length 312
Translation Table 11
tRNA Count (total) 31
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHNG00000000.1