Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 0161
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 98.38%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 243
N50 Contigs 18,060 bp
Longest Contig 53,184 bp
Scaffold Count 188
N50 Scaffolds 26,305 bp
Longest Scaffold 86,954 bp
Genome Size 2,101,421 bp
Protein Count 2,050
Coding Density 84.94%
GC Percentage 39.71%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5737_7#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1022885
Country Thailand
Date 2015-4-2
Genbank Assembly Accession GCA_001334135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,199
Refseq Category na
Seq Rel Date 2015/04/02
Spanned Gaps 55
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 16212
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFIG00000000.1