Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 0148
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 95.99%
CheckM Contamination 0.25%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 214
N50 Contigs 18,987 bp
Longest Contig 99,105 bp
Scaffold Count 110
N50 Scaffolds 50,541 bp
Longest Scaffold 216,417 bp
Genome Size 2,095,151 bp
Protein Count 2,030
Coding Density 82.69%
GC Percentage 39.73%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5737_6#7
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1022875
Country Thailand
Date 2015-4-22
Genbank Assembly Accession GCA_001334115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,220
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 104
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 31591
Translation Table 11
tRNA Count (total) 29
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHAQ00000000.1