Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B025;L617
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.18%
CheckM Contamination 0.87%
CheckM Strain Heterogeneity 40.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,001
N50 Contigs 6,434 bp
Longest Contig 48,376 bp
Scaffold Count 929
N50 Scaffolds 6,886 bp
Longest Scaffold 48,376 bp
Genome Size 3,744,173 bp
Protein Count 4,179
Coding Density 89.27%
GC Percentage 67.70%
Ambiguous Bases 8
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5476_7#1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751521
Country Australia
Date 2015-7-24
Genbank Assembly Accession GCA_001333935.1
Genome Category Isolate
Genome Representation full
Isolate L617
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,022
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 72
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 9066
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGHJ00000000.1