Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers BP601;B010
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.96%
CheckM Contamination 1.19%
CheckM Strain Heterogeneity 16.67
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,210
N50 Contigs 5,687 bp
Longest Contig 33,902 bp
Scaffold Count 1,157
N50 Scaffolds 5,715 bp
Longest Scaffold 33,902 bp
Genome Size 3,702,124 bp
Protein Count 4,350
Coding Density 89.33%
GC Percentage 67.67%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5633_2#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751518
Country Argentina
Date 2015-7-24
Genbank Assembly Accession GCA_001333895.1
Genome Category Isolate
Genome Representation full
Isolate BP601
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,145
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 53
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 9709
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGFV00000000.1