Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers BP312;B008
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 98.64%
CheckM Contamination 1.8%
CheckM Strain Heterogeneity 57.14
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 899
N50 Contigs 7,417 bp
Longest Contig 48,378 bp
Scaffold Count 873
N50 Scaffolds 7,546 bp
Longest Scaffold 48,378 bp
Genome Size 3,762,576 bp
Protein Count 4,142
Coding Density 89.72%
GC Percentage 67.78%
Ambiguous Bases N/A
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5633_2#3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751517
Country Argentina
Date 2015-7-24
Genbank Assembly Accession GCA_001333875.1
Genome Category Isolate
Genome Representation full
Isolate BP312
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,973
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 26
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 3602
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGFH00000000.1