Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B017;L590
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 342
N50 Contigs 18,972 bp
Longest Contig 44,925 bp
Scaffold Count 305
N50 Scaffolds 20,065 bp
Longest Scaffold 67,960 bp
Genome Size 3,829,345 bp
Protein Count 3,695
Coding Density 90.06%
GC Percentage 67.92%
Ambiguous Bases 3
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5476_6#6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751512
Country Australia
Date 2015-4-22
Genbank Assembly Accession GCA_001333795.1
Genome Category Isolate
Genome Representation full
Isolate L590
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,645
Refseq Category na
Seq Rel Date 2015/04/22
Spanned Gaps 37
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 2027
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHFQ00000000.1