Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers L646;B029
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.29%
CheckM Contamination 0.83%
CheckM Strain Heterogeneity 20.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 702
N50 Contigs 9,373 bp
Longest Contig 48,447 bp
Scaffold Count 655
N50 Scaffolds 9,880 bp
Longest Scaffold 48,447 bp
Genome Size 3,790,168 bp
Protein Count 3,980
Coding Density 89.64%
GC Percentage 67.82%
Ambiguous Bases 22
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5476_7#5
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751500
Country Australia
Date 2015-7-24
Genbank Assembly Accession GCA_001333695.1
Genome Category Isolate
Genome Representation full
Isolate L646
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,873
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 47
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 5536
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGHR00000000.1