Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers BP227;B138
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 98.21%
CheckM Contamination 0.87%
CheckM Strain Heterogeneity 40.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 887
N50 Contigs 7,548 bp
Longest Contig 48,387 bp
Scaffold Count 844
N50 Scaffolds 7,648 bp
Longest Scaffold 48,387 bp
Genome Size 3,751,666 bp
Protein Count 4,131
Coding Density 89.57%
GC Percentage 67.73%
Ambiguous Bases 8
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5515_7#3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751488
Country Japan
Date 2015-7-24
Genbank Assembly Accession GCA_001333555.1
Genome Category Isolate
Genome Representation full
Isolate BP227
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,973
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 43
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 4497
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHFH00000000.1