Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers BP93001;B278
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.65%
CheckM Contamination 1.57%
CheckM Strain Heterogeneity 14.29
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,206
N50 Contigs 5,607 bp
Longest Contig 38,363 bp
Scaffold Count 1,127
N50 Scaffolds 5,782 bp
Longest Scaffold 38,363 bp
Genome Size 3,689,860 bp
Protein Count 4,312
Coding Density 89.15%
GC Percentage 67.62%
Ambiguous Bases 4
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5476_8#3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751460
Country Taiwan
Date 2015-7-23
Genbank Assembly Accession GCA_001333195.1
Genome Category Isolate
Genome Representation full
Isolate BP93001
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,104
Refseq Category na
Seq Rel Date 2015/07/23
Spanned Gaps 79
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 9066
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFWI00000000.1