Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B277;PT3783
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 94.74%
CheckM Contamination 1.38%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,306
N50 Contigs 5,253 bp
Longest Contig 38,358 bp
Scaffold Count 1,117
N50 Scaffolds 5,888 bp
Longest Scaffold 38,358 bp
Genome Size 3,643,581 bp
Protein Count 4,258
Coding Density 88.04%
GC Percentage 67.52%
Ambiguous Bases 37
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5476_8#1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751458
Country Taiwan
Date 2015-07-23
Genbank Assembly Accession GCA_001333155.1
Genome Category Isolate
Genome Representation full
Isolate PT3783
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,168
Refseq Category na
Seq Rel Date 2015/07/23
Spanned Gaps 189
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 28912
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFNR00000000.1