Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B059;Bp02-044
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.19%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 25.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 692
N50 Contigs 9,583 bp
Longest Contig 48,396 bp
Scaffold Count 662
N50 Scaffolds 9,887 bp
Longest Scaffold 48,396 bp
Genome Size 3,784,493 bp
Protein Count 3,984
Coding Density 89.67%
GC Percentage 67.84%
Ambiguous Bases 10
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5601_1#11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751455
Country Canada
Date 2015-7-24
Genbank Assembly Accession GCA_001333135.1
Genome Category Isolate
Genome Representation full
Isolate Bp02-044
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,870
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 30
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 4470
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHKV00000000.1