Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers D898;B334
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.57%
CheckM Contamination 1.57%
CheckM Strain Heterogeneity 14.29
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,119
N50 Contigs 6,088 bp
Longest Contig 58,329 bp
Scaffold Count 1,038
N50 Scaffolds 6,282 bp
Longest Scaffold 61,144 bp
Genome Size 3,689,328 bp
Protein Count 4,245
Coding Density 88.85%
GC Percentage 67.61%
Ambiguous Bases 11
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5601_3#11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751407
Country USA
Date 2015-7-24
Genbank Assembly Accession GCA_001332695.1
Genome Category Isolate
Genome Representation full
Isolate D898
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,079
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 81
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 15289
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFZW00000000.1