Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers D075;B331
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.29%
CheckM Contamination 0.83%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 641
N50 Contigs 10,695 bp
Longest Contig 51,648 bp
Scaffold Count 590
N50 Scaffolds 11,495 bp
Longest Scaffold 51,648 bp
Genome Size 3,776,652 bp
Protein Count 3,920
Coding Density 89.56%
GC Percentage 67.81%
Ambiguous Bases N/A
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5601_3#8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751382
Country USA
Date 2015-7-24
Genbank Assembly Accession GCA_001332655.1
Genome Category Isolate
Genome Representation full
Isolate D075
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,815
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 51
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 6797
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFXW00000000.1