Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B316;A214
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.89%
CheckM Contamination 1.1%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,143
N50 Contigs 6,128 bp
Longest Contig 33,884 bp
Scaffold Count 1,091
N50 Scaffolds 6,155 bp
Longest Scaffold 33,884 bp
Genome Size 3,703,254 bp
Protein Count 4,293
Coding Density 89.46%
GC Percentage 67.66%
Ambiguous Bases 3
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5633_3#10
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751368
Country USA
Date 2015-7-24
Genbank Assembly Accession GCA_001332575.1
Genome Category Isolate
Genome Representation full
Isolate A214
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,094
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 52
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 7454
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGFA00000000.1