Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B0585;B175
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 340
N50 Contigs 18,117 bp
Longest Contig 67,877 bp
Scaffold Count 327
N50 Scaffolds 18,869 bp
Longest Scaffold 67,877 bp
Genome Size 3,846,818 bp
Protein Count 3,732
Coding Density 90.23%
GC Percentage 67.93%
Ambiguous Bases 7
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5633_3#6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751360
Country Netherlands
Date 2015-4-2
Genbank Assembly Accession GCA_001332535.1
Genome Category Isolate
Genome Representation full
Isolate B0585
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,674
Refseq Category na
Seq Rel Date 2015/04/02
Spanned Gaps 13
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 559
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFXS00000000.1