Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B246;A Kope5603
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 97.8%
CheckM Contamination 0.71%
CheckM Strain Heterogeneity 25.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 816
N50 Contigs 7,806 bp
Longest Contig 48,424 bp
Scaffold Count 765
N50 Scaffolds 7,954 bp
Longest Scaffold 48,424 bp
Genome Size 3,710,455 bp
Protein Count 3,990
Coding Density 89.29%
GC Percentage 67.72%
Ambiguous Bases 7
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5476_2#12
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751354
Country Sweden
Date 2015-7-24
Genbank Assembly Accession GCA_001332495.1
Genome Category Isolate
Genome Representation full
Isolate A Kope5603
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,865
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 51
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 7409
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHFL00000000.1