Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers O39;B249
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.35%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 545
N50 Contigs 11,799 bp
Longest Contig 62,140 bp
Scaffold Count 501
N50 Scaffolds 12,497 bp
Longest Scaffold 62,140 bp
Genome Size 3,809,536 bp
Protein Count 3,867
Coding Density 89.46%
GC Percentage 67.84%
Ambiguous Bases 2
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6062_2#9
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751334
Country Sweden
Date 2015-7-24
Genbank Assembly Accession GCA_001332455.1
Genome Category Isolate
Genome Representation full
Isolate O39
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,784
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 44
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 8710
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGHL00000000.1