Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B262;P491;04;P491/04
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 98.57%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 668
N50 Contigs 9,913 bp
Longest Contig 48,454 bp
Scaffold Count 616
N50 Scaffolds 10,540 bp
Longest Scaffold 48,454 bp
Genome Size 3,776,137 bp
Protein Count 3,932
Coding Density 89.48%
GC Percentage 67.80%
Ambiguous Bases 13
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5476_2#9
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751309
Country Sweden
Date 2015-7-24
Genbank Assembly Accession GCA_001332275.1
Genome Category Isolate
Genome Representation full
Isolate P491/04
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,839
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 52
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 6890
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFXA00000000.1