Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers C477;B327
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.65%
CheckM Contamination 1.22%
CheckM Strain Heterogeneity 14.29
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,133
N50 Contigs 6,077 bp
Longest Contig 33,904 bp
Scaffold Count 1,071
N50 Scaffolds 6,277 bp
Longest Scaffold 33,904 bp
Genome Size 3,691,602 bp
Protein Count 4,274
Coding Density 89.18%
GC Percentage 67.62%
Ambiguous Bases 12
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5601_3#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751248
Country USA
Date 2015-7-24
Genbank Assembly Accession GCA_001332155.1
Genome Category Isolate
Genome Representation full
Isolate C477
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,079
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 62
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 10774
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFXZ00000000.1