Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B078;DK15
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 98.05%
CheckM Contamination 0.71%
CheckM Strain Heterogeneity 25.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 749
N50 Contigs 8,990 bp
Longest Contig 51,668 bp
Scaffold Count 719
N50 Scaffolds 9,369 bp
Longest Scaffold 51,668 bp
Genome Size 3,779,380 bp
Protein Count 4,028
Coding Density 89.72%
GC Percentage 67.81%
Ambiguous Bases 1
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5601_1#2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751189
Country Denmark
Date 2015-7-24
Genbank Assembly Accession GCA_001331975.1
Genome Category Isolate
Genome Representation full
Isolate DK15
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,898
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 30
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 4769
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFZS00000000.1