Lactiplantibacillus plantarum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactiplantibacillus; s__Lactiplantibacillus plantarum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum
NCBI Strain Identifiers WLPL04
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615325.1)
Genome Characteristics
CheckM Completeness 99.07%
CheckM Contamination 2.78%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 1
N50 Contigs 3,141,590 bp
Longest Contig 3,141,590 bp
Scaffold Count 1
N50 Scaffolds 3,141,590 bp
Longest Scaffold 3,141,590 bp
Genome Size 3,141,590 bp
Protein Count 2,938
Coding Density 83.65%
GC Percentage 44.68%
Ambiguous Bases N/A
GTDB representative GCA_000615325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM133192v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04092618
Country China: Nanchang
Date 2018-10-18
Genbank Assembly Accession GCA_001331925.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source breast of healthy woman
Latitude Longitude None
Molecule Count 1
CDS Count 2,961
Refseq Category na
Seq Rel Date 2018/10/18
Spanned Gaps 0
Species Taxid 1590
SSU Count 5
Submitter Nanchang University
Taxid 1590
Total Gap Length 0
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None