Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B320;B385
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 437
N50 Contigs 14,490 bp
Longest Contig 48,513 bp
Scaffold Count 416
N50 Scaffolds 14,918 bp
Longest Scaffold 54,193 bp
Genome Size 3,807,158 bp
Protein Count 3,780
Coding Density 89.93%
GC Percentage 67.89%
Ambiguous Bases 20
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5601_5#9
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751182
Country USA
Date 2015-7-24
Genbank Assembly Accession GCA_001331895.1
Genome Category Isolate
Genome Representation full
Isolate B385
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,717
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 21
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 1543
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGHU00000000.1