Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers BP96006;B285
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.74%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 543
N50 Contigs 11,956 bp
Longest Contig 54,037 bp
Scaffold Count 519
N50 Scaffolds 12,554 bp
Longest Scaffold 54,037 bp
Genome Size 3,807,466 bp
Protein Count 3,867
Coding Density 89.92%
GC Percentage 67.87%
Ambiguous Bases 23
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5476_8#10
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751166
Country Taiwan
Date 2015-7-24
Genbank Assembly Accession GCA_001331735.1
Genome Category Isolate
Genome Representation full
Isolate BP96006
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,777
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 24
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 2142
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFYR00000000.1