Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers DK12;B075
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 91.93%
CheckM Contamination 1.02%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,301
N50 Contigs 5,163 bp
Longest Contig 27,886 bp
Scaffold Count 1,042
N50 Scaffolds 6,032 bp
Longest Scaffold 33,979 bp
Genome Size 3,618,935 bp
Protein Count 4,207
Coding Density 87.07%
GC Percentage 67.44%
Ambiguous Bases 26
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5515_8#11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751159
Country Denmark
Date 2015-07-23
Genbank Assembly Accession GCA_001331675.1
Genome Category Isolate
Genome Representation full
Isolate DK12
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,112
Refseq Category na
Seq Rel Date 2015/07/23
Spanned Gaps 259
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 48948
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFWN00000000.1