Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers PRCB118;B085
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.18%
CheckM Contamination 1.22%
CheckM Strain Heterogeneity 14.29
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,207
N50 Contigs 5,753 bp
Longest Contig 33,927 bp
Scaffold Count 1,146
N50 Scaffolds 5,783 bp
Longest Scaffold 33,927 bp
Genome Size 3,698,601 bp
Protein Count 4,334
Coding Density 88.98%
GC Percentage 67.59%
Ambiguous Bases 25
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5601_2#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751150
Country Finland
Date 2015-7-24
Genbank Assembly Accession GCA_001331615.1
Genome Category Isolate
Genome Representation full
Isolate PRCB118
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,130
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 61
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 11652
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFZF00000000.1