Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B121;13167
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 312
N50 Contigs 18,997 bp
Longest Contig 73,346 bp
Scaffold Count 281
N50 Scaffolds 20,826 bp
Longest Scaffold 73,346 bp
Genome Size 3,817,667 bp
Protein Count 3,677
Coding Density 90.12%
GC Percentage 67.94%
Ambiguous Bases 11
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5515_5#6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751138
Country Italy
Date 2015-4-2
Genbank Assembly Accession GCA_001331515.1
Genome Category Isolate
Genome Representation full
Isolate 13167
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,620
Refseq Category na
Seq Rel Date 2015/04/02
Spanned Gaps 31
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 2690
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFKX00000000.1