Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B106;L672
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 96.73%
CheckM Contamination 0.71%
CheckM Strain Heterogeneity 25.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,015
N50 Contigs 6,667 bp
Longest Contig 33,902 bp
Scaffold Count 792
N50 Scaffolds 7,609 bp
Longest Scaffold 36,850 bp
Genome Size 3,691,840 bp
Protein Count 4,039
Coding Density 87.61%
GC Percentage 67.61%
Ambiguous Bases 24
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5463_6#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2015295
Country Hong Kong
Date 2015-07-24
Genbank Assembly Accession GCA_001331335.1
Genome Category Isolate
Genome Representation full
Isolate L672
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,980
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 223
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 34176
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHFK00000000.1