Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B3189;B152
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 407
N50 Contigs 14,809 bp
Longest Contig 90,737 bp
Scaffold Count 295
N50 Scaffolds 19,484 bp
Longest Scaffold 100,054 bp
Genome Size 3,846,507 bp
Protein Count 3,716
Coding Density 89.84%
GC Percentage 67.93%
Ambiguous Bases 58
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5463_3#12
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1931748
Country Kenya
Date 2015-7-24
Genbank Assembly Accession GCA_001331155.1
Genome Category Isolate
Genome Representation full
Isolate B3189
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,666
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 112
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 6884
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CFYF00000000.1