Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers RU140;B236
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 93.5%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,140
N50 Contigs 5,957 bp
Longest Contig 33,853 bp
Scaffold Count 808
N50 Scaffolds 7,658 bp
Longest Scaffold 48,525 bp
Genome Size 3,681,281 bp
Protein Count 4,024
Coding Density 86.23%
GC Percentage 67.54%
Ambiguous Bases 28
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5463_7#10
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1931720
Country Russia
Date 2015-07-24
Genbank Assembly Accession GCA_001331135.1
Genome Category Isolate
Genome Representation full
Isolate RU140
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,995
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 332
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 59236
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CHFN00000000.1