Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers A;A/63;63;B220
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 375
N50 Contigs 16,152 bp
Longest Contig 47,695 bp
Scaffold Count 302
N50 Scaffolds 18,956 bp
Longest Scaffold 73,385 bp
Genome Size 3,828,670 bp
Protein Count 3,688
Coding Density 89.97%
GC Percentage 67.93%
Ambiguous Bases 29
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5463_6#12
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1931348
Country Poland
Date 2015-7-27
Genbank Assembly Accession GCA_001331055.1
Genome Category Isolate
Genome Representation full
Isolate A/63
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 3,642
Refseq Category na
Seq Rel Date 2015/07/27
Spanned Gaps 73
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 4250
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CIGO00000000.1