Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers K01_01244
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 97.49%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 190
N50 Contigs 21,633 bp
Longest Contig 80,593 bp
Scaffold Count 145
N50 Scaffolds 33,821 bp
Longest Scaffold 80,593 bp
Genome Size 2,036,583 bp
Protein Count 1,988
Coding Density 84.26%
GC Percentage 39.70%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5468_1#1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682588
Country South Korea
Date 2015-4-6
Genbank Assembly Accession GCA_001330855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 2,178
Refseq Category na
Seq Rel Date 2015/04/06
Spanned Gaps 45
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 14051
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CVIR00000000.1