Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 09B08788
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 96.62%
CheckM Contamination 1.2%
CheckM Strain Heterogeneity 92.86
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 185
N50 Contigs 23,145 bp
Longest Contig 80,114 bp
Scaffold Count 116
N50 Scaffolds 36,266 bp
Longest Scaffold 154,041 bp
Genome Size 2,100,245 bp
Protein Count 2,046
Coding Density 84.40%
GC Percentage 39.79%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5381_3#11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682576
Country Thailand: Maela
Date 2015-7-24
Genbank Assembly Accession GCA_001330755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,229
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 69
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 21625
Translation Table 11
tRNA Count (total) 35
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CGAS00000000.1