Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers K01_071280
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 1.59%
CheckM Strain Heterogeneity 71.43
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 74
N50 Contigs 54,136 bp
Longest Contig 139,462 bp
Scaffold Count 73
N50 Scaffolds 54,521 bp
Longest Scaffold 144,891 bp
Genome Size 2,101,173 bp
Protein Count 2,102
Coding Density 86.06%
GC Percentage 39.50%
Ambiguous Bases 15
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5504_3#10
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682412
Country South Korea
Date 2015-4-6
Genbank Assembly Accession GCA_001330475.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 2,268
Refseq Category na
Seq Rel Date 2015/04/06
Spanned Gaps 1
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 89
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CVII00000000.1